[Product Releases]
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[Blog]
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Most recent post
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[News]
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Can we trust docking results? Sept 2010 IBM Systems and Technology Group releases a white paper with eHiTS and Cell
Oct 2008
EPA's ToxCastTM project will use SimBioSys' eHiTS as docking engine
Nov, 2007
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[Events]
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| 243rd ACS
Mar 25-29, 2012 San Diego, CA
see >> more
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Publications
/ Posters on
eHiTS and other SimBioSys Products by Independent Scientists
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User Publications up to 2008:
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Proteins: Structure, Function, and Bioinformatics
Volume 73, Issue 4, Date: December 2008, Pages: 889-901 Structure-based
approach to pharmacophore identification, in silico screening, and
three-dimensional quantitative structure–activity relationship studies
for inhibitors of Trypanosoma cruzi dihydrofolate reductase function N. Schormann, O. Senkovich, K. Walker, D.L. Wright, A.C. Anderson, A.
Rosowsky, S. Ananthan, B. Shinkre, S. Velu, D. Chattopadhyay DOI: 10.1002/prot.22115
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Mol Cell
Endocrinol. 2008
Aug 14. [Epub ahead of print]
Discovery of new inhibitors of aldo-keto
reductase 1C1 by structure-based virtual screening.
Brožič
P, Turk
S, Lanišnik
Rižner T, Gobec
S.
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Online ISSN
0973-2063;
Print ISSN 0973-8894 |
Bioinformation, 2008 May 13;2(8):325-9.
Virtual
screening for novel COX-2 inhibitors using the ZINC database.
Sudha
KN, Shakira
M, Prasanthi
P, Sarika
N, Kumar
ChN, Babu
PA.
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Bioorganic & Medicinal Chemistry
Letters, Volume 18 (2008), Issues 11, June 1 2008
pp. 3152–3157
"Structure-based prediction of Mycobacterium tuberculosis shikimate
kinase
inhibitors by high-throughput virtual screening"
Aldo Segura-Cabrera, Mario A. Rodriguez-Perez
view Article:
doi:10.1016/j.bmcl.2008.05.003
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Current Pharmaceutical Analysis, Volume 4,
Number
1, February 2008, ISSN: 1573-4129
Protein-ligand Docking: A Review of Recent Advances and Future
Perspectives
Montserrat Vaque, Anna Ardevol, Cinta Blade, M. Josepa Salvado, Mayte
Blay, Juan Fernandez-Larrea, Lluis Arola and Gerard Pujadas
View: abstract
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PLoS Computational Biology. 2008 Jan;
[Open Access Reserach Article]
In Silico Elucidation of the Molecular Mechanism Defining the Adverse
Effect of Selective Estrogen Receptor Modulators
Lei Xie, Jian Wang, Philip E. Bourne
View Article:
DOI: 10.1371
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Nature / British Journal of
Pharmacology (2008) 153, S7–S26;
doi:10.1038/sj.bjp.0707515; published online 26 November 2007
Towards
the development of universal, fast and highly accurate docking/scoring
methods: a long way to go N Moitessier, P Englebienne, D Lee,
J Lawandi and C R Corbeil
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J Chem
Inf Model. 2007
Oct 18;
[Epub ahead of print]
Impact of Ligand Protonation on Virtual Screening against
beta-Secretase (BACE1).
Polgar T,
Magyar C, Simon I,
Keseru GM.
View Article:
DOI: 10.1021/ci700223p
SimBioSys: discussion
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Proteins.
2007
Oct 1;69(1):160-76.
Evaluation
of docking programs for predicting binding of Golgi alpha-mannosidase
II inhibitors: a comparison with crystallography.
Englebienne P, Fiaux H,
Kuntz DA,
Corbeil CR, Gerber-Lemaire S, Rose DR, Moitessier N.
View Article:
SimBioSys: discussion
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Jul 2007, Bioorganic
& Medicinal
Chemistry Volume 15, Issue 14, 15 July 2007, Pages 4985-5002:
Discovery
of
structurally diverse HIV-1 integrase inhibitors based on a chalcone
pharmacophore
Jinxia Deng, Tino Sanchez, Laith Q. Al-Mawsawi, Raveendra Dayam,
Rosendo A. Yunes, Antonio Garofalo, Michael B. Bolgerd and Nouri
Neamati
View: article
doi:10.1016/j.bmc.2007.04.041
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Jun 2007, Frontiers in
Drug Design and
Discovery,
ISBN: 90-77527-03-6, Volume 3, 2007, Pp. 477-502:
Structure-Based
Virtual Screening
T. Polg�r and G.M. Keseru
View: chapter
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Jan 2007, Journal of
Chemical
Information and Modeling, Web Edition January 18, 2007:
eHiTS-to-VMD
Interface Application. The Search for Tyrosine-tRNA Ligase Inhibitors
Krystian Eitner, Tomasz Gawda, Marcin Hoffmann, Mirosawa Jura, Leszek
Rychlewski, and Jan Barciszewski;
View: article
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March 2006,:
Bioorganic & Medicinal Chemistry Letters
Volume 16, Issue 6 , Pages 1610-1615: gives a user's
perspective
on eHiTS:
Darrell E. Hurt et al: Brequinar derivatives and
species-specific
drug design for dihydroorotate dehydrogenase;
View:
article doi:10.1016/j.bmcl.2005.12.029 |
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June 2005,
J. Am. Chem. Soc.:
Kerwin, S. M.: Computer Software Review of: eHiTS 5.1.6,
SimBioSys
Inc.;
View :
article |
Scientific
Presentations and Posters
2006 - 2008
| | |  | "Effects of initial conformations of small ligands on computational docking accuracies"
Akifumi Oda1, Ohgi Takahashi1, Noriyuki Yamaotsu2, Shuichi Hirono2
(1)Tohoku Pharmaceutical University, 4-4-1, Komatsushima, Aoba-ku, Sendai, Miyagi, 981-8558, Japan, http://www.tohoku-pharm.ac.jp/
(2)Kitasato University, 5-9-1, Sirokane, Minato-ku, Tokyo, 108-8641, Japan,
Presented at the IUCr 2008 Osaka, Japan conference, XXI Congress and General Assembly of the International Union of Crystallography, 23-31 August, 2008
Site now: http://www.iucr2008.jp/
new site after Dec 25th 2008: http://www.crsj.jp/IUCr2008/
see poster abstract on our site. | |

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"Elucidation of Mechanisms of
Action of
Molecules with Anti-Cancer Activity Using Molecular Docking"
Ines Sousa, Visvaldas Kairys, Jose M. Padron, Miguel X. Fernandes
2nd Meeting YBIM (Young Biomedical Investigators of the Macaronesia),
held on November 10-13, 2007 at Lanzarote, Spain.
see presentation
(pdf)
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Structure-based Drug Design:
Molecular
Docking Studies
Jinxia (Nancy) Deng, PhD, Postdoctoral
Research Associate
University of South California, School of Pharmacy
Sept 25, 2007 see presentation
(PDF)
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Digging Deeper into Deep Data:
Molecular
Docking as a Hypothesis-driven Biophysical Interrogation System in
Computational
Toxicology (PDF, 15KB, 1pp)
Contact:
Michael
Goldsmith, U.S. EPA/Office of Research and
Development (ORD)/National Center for Computational Toxicology (NCCT)
See poster
(PDF, 245KB, 1pp)
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Preoxisome-Proliferation
Activated Receptors as a Macromolecular Target for Chemical Toxicity:
Models of the Interactions of PPARs with Perfluorinated Organic
Compounds
Contact:
Michael
Goldsmith, U.S. EPA/Office of Research and
Development (ORD)/National Center for Computational Toxicology (NCCT)
See poster
(PDF)
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Identification
of a novel BACE1 inhibitor scaffold via an in silico screening approach
James
Chadwick,
Kathrine A.B. Davery, N. Yi Mok, Nigel M.Hooper, A. Peter Johnson and
Colin W.G. Fishwick
School of Chemistry and Institute of Moelcular and Cellular Biology,
Universirty of Leeds, Leeds, UK, LS2 9JT, UK
see presentation
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Presented
at the 5th
Joint Meeting on Medicinal Chemistry, Portoroz, Slovenia, June 17 - 21,
2007
:
Novel
Inhibitors
Novel Inhibitors of Isoleucyl-tRNA Synthetase as
Potential Antibacterial Drugs
Nicola
J. Potter,
Ian Chopra, Julian G. Hurdle, A. Peter Johnson & Colin W.G.
Fishwick
School
of Chemistry
& bInstitute of Molecular & Cellular Biology,
University of
Leeds, Leeds, LS2 9JT, U.K.
see presentation
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STRUCTURE-BASED DESIGN OF
INHIBITORS OF
CLASS 2 DIHYDROOROTATE DEHYDROGENASES
Heikkila TJ, Davies M, Parsons MR, Johnson AP
MR, Johnson AP
see presentation
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Design and Synthesis of New
Dihydroorotate
Dehydrogenase Inhibitors as Potent Antimalarials
Matthew Daviesa, Timo Heikkil�b, Dr. C. W. G. Fishwicka* and Prof.
A. P.
Johnsona
School of Chemistry, University of Leeds, UK, LS2 9JT and bSchool of
Biochemistry and Microbiology, University of Leeds, UK, LS2 9JT
see presentation
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July
15-19, 2007,
Montreal, Canada
ICTXI\u2013Eleventh
International Congress of Toxicology: "Discovery Serving
Society"
a poster presentation on: "Peroxisome-Proliferator
Activated
Receptors as a Macromolecular Target for Chemical Toxicity: Models of
the Interactions of PPARs with Perfluorinated Organic Compounds"
by Michael-Rock Goldsmith, James Rabinowitz U.S EPA, ORD,
Computational Toxicology Research Program
see presentation
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De
Novo Design & Synthesis of Novel RNA Polymerase Inhibitors as
Potential
Anti-Tuberculosis
Agents
Anil K. Agarwal, Julian Hurdle, Amer I. AlOmar, Ian Chopra, A. Peter
Johnson & Colin W. G. Fishwick
see presentation
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November
12-15, 2006,
San Paolo, Brasil
The
3rd Brazilian Symposium on Medicinal Chemistry; " Recent
Advances
in Drug Discovery and Development",
a poster presentation on: "Structures
of the Pteridine Reductase
(PTR1) from Trypanosoma brucei Complexed with Folate Analog Inhibitors."
by Viviane Paula Martini (a), Jorge Iulek (a), William Nigel
Hunter (b), Lindsay Brian Tulloch (b)
a) Department of Chemistry, Biotechnology Center, State University of
Ponta Grossa - PR, Brazil. b) Division of Biological Chemistry and
Molecular Microbiology, School of Life Sciences, University of Dundee,
UK.; e-mail: w.n.hunter@dundee.ac.uk, iulek@uepg.br
see presentation
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SimBioSys would like to recognize the efforts of those using our
products by
including them on this website. If you have given a
presentation
or written
a publication using results obtained from eHiTS, please contact us so we
can
acknowledge your work.
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